User: aaronrosenstein

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Posts by aaronrosenstein

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Comment: C: Reading Illumina HT12 V4.0 Data from GEO into Lumi
... Thank you so much Gordon! I really appreciate it! ...
written 4 weeks ago by aaronrosenstein0
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Reading Illumina HT12 V4.0 Data from GEO into Lumi
... Hello, I am relatively new to preprocessing microarray data, and am trying to analyze the GEO dataset "GSE56045". I downloaded the supplementary RAW files to manipulate with lumi, however the file format does not seem to be compatible with the lumiR function. The header of the RAW file is as follow ...
geoquery lumi illumina human ht-12 v4 gene expression geo written 4 weeks ago by aaronrosenstein0 • updated 4 weeks ago by Gordon Smyth32k
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Filtering Tophat/cufflinks data for GSEA with topGO
...   Hello all, I am currently doing some GO enrichment using topGO on an RNA-seq experiment that was analyzed using tophat/cufflinks.  Having used topGO before, I am fairly versed in its proper use. I would like to do GSEA using the KS test with the elim algorithm, however I want to be sure I am pr ...
topgo tophat kolmogorov-smirnov test written 4 months ago by aaronrosenstein0 • updated 4 months ago by James W. MacDonald45k

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