User: LR0306

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LR030610
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Posts by LR0306

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DESeq2 (Different results when using interactive term equation)
...   Hello all, I am trying to use DESeq2 to determine the number of main effect DEGs and interaction DEGs in a two-factor experiment, where each factor has 2 levels. ################################################### Basically, for my coldata object below,  > coldata      disease vitamin tre ...
deseq2 written 19 months ago by LR030610 • updated 19 months ago by Michael Love26k
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Answer: A: Accounting for both categorical and numerical possible confounding variables in
... Thank you for your detailed and helpful response. To be honest, I do feel that I am blindly flailing around :o) with this next step, which is trying to account for possible confounding variables. In the meantime, I did notice from your post that there is information that I did not provide clearly, a ...
written 2.4 years ago by LR030610
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Accounting for both categorical and numerical possible confounding variables in the limmaVoom pipeline
... I have an RNA-sequencing dataset that has 8 treatment groups and 2 factors. One factor is "virus" and has 2 levels ("N" = no virus, "V" = virus). The other factor is "diet" and has 4 levels ranging from great to poor diets ("B", "C", "D", "E"). Each treatment group has 6 replicates, creating a total ...
limma duplicatecorrelation limma voom written 2.4 years ago by LR030610

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