User: orzechowska.mag

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Posts by orzechowska.mag

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Comment: C: CAGEr BAM files size issue
... The issue is gone now. Thank you very much for your support and solution. I really appreciate it. All the best! ...
written 9 weeks ago by orzechowska.mag10
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Comment: C: CAGEr BAM files size issue
... Hi, thank you for reply. Maybe I should ask Biostrings support how to solve this issue then. I have some alternative solution that before sorting my .bam I will randomly pick the reads to prepare a bit smaller, digestible file for CAGEr, but ideally I wish to avoid that. This is solution for the ...
written 3 months ago by orzechowska.mag10
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Comment: C: CAGEr BAM files size issue
... Dear Charles, unfortunately I could not find as big file as mine, which generates the same difficulties. I shared via e-mail with you my file, which triggers the bug and one publicly available, which does not (http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeRikenCage/releaseLat ...
written 3 months ago by orzechowska.mag10
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CAGEr BAM files size issue
... Dear Colleagues,  Recently I am analyzing my CAGE data using CAGEr package and I have experienced some difficulties. My project consists of 10 libraries among which 9 .bam files are up to 940 MB and one .bam is 1.5 GB. At the level of getCTSS(cage_bam) for this one huge file I obtain error:  > ...
biostrings cager software error R bam written 3 months ago by orzechowska.mag10 • updated 10 weeks ago by Charles Plessy30

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