User: iaingallagher

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Posts by iaingallagher

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Comment: C: Gviz BiomartGeneRegionTrack() error on filters use
... Ok, got it. Should be: test <- BiomartGeneRegionTrack(biomart=mart, genome='hg19', name='ALDH6A1', gene='ENSG00000119711', filters=list(hgnc_symbol='ALDH6A1')) From here: https://support.bioconductor.org/p/73329/ best, i ...
written 4 months ago by iaingallagher0
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Comment: C: Gviz cannot make gene region track
... Fixed this. The problem was the use of chromosome = seqnames in the last line... seqnames being a function. Hey ho. best, i ...
written 4 months ago by iaingallagher0
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Gviz BiomartGeneRegionTrack() error on filters use
... Hi I'm trying to build a track for only one gene. The Gviz documentation suggests that to do this with the BiomartGeneRegionTrack() function I have to pass in a biomart filter. Using the code below I get an error. library(Gviz) library(biomaRt) mart <- useMart(biomart="ensembl", dataset="hsap ...
gviz bioconductor written 4 months ago by iaingallagher0
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Gviz cannot make gene region track
... Hi In the script below I'm trying to plot a single gene using Gvis. On trying to create the gene track I get the following error: Error in chromosome[1] : object of type 'closure' is not subsettable Can anyone shed any light on this? Code follows: # plot tfbs in IS core correlating genes libr ...
gviz bioconductor written 4 months ago by iaingallagher0

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