User: lykhenko.olexandr

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Posts by lykhenko.olexandr

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Comment: C: How to set custom Brainarray annotation for Biobase ExpressionSet object?
... Thank you James W. MacDonald for suggested solution. I couldn't not find out however what was paremeter target="mps1" for in affyEsets <- lapply(affyData, rma, target = "mps1") The interpreter says that this parameter is unused.   ...
written 4 months ago by lykhenko.olexandr0
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How to set custom Brainarray annotation for Biobase ExpressionSet object?
... I have downloaded from ArrayExpress raw data for microarray experiment E-GEOD-14722 (GSE14722): aeData = getAE("E-GEOD-14722", type = 'raw') and turned it into an ExpressionSet object. In fact, a list of two object, since the experiment uses two platforms. affyData = ae2bioc(mageFiles = aeData) ...
annotation biobase expressionset brainarray affymetrix microarrays written 4 months ago by lykhenko.olexandr0 • updated 4 months ago by James W. MacDonald45k

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