User: philip.freda

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Posts by philip.freda

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Comment: C: EdgeR model not of full tank
... Another question: does renumbering them still keep them separate? In other words line 1 in LL and line 1 in HL are two totally different genetic lines ...
written 9 weeks ago by philip.freda0
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Comment: C: EdgeR model not of full tank
... Here is the new model matrix:   (Intercept) phenoL0LL phenoL0LL:lineL0380 phenoL0HL:lineL0441 phenoL0LL:lineL0486 phenoL0HL:lineL0832 phenoL0HL:lineL0913 droso_1_exp_count 1 1 0 0 0 0 0 droso_14_exp_count 1 1 1 0 0 ...
written 9 weeks ago by philip.freda0
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Comment: C: EdgeR model not of full tank
... I tried what you proposed but got this error. Any idea what the problem may be? The error is much shorter than previously with only one line (913) listed within the error   Error in glmFit.default(sely, design, offset = seloffset, dispersion = 0.05,  :    Design matrix not of full rank.  The follo ...
written 9 weeks ago by philip.freda0
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EdgeR model not of full rank
... I have data that has genetic line (line) and phenotype (pheno) as my factors and my data looks something like this: sample_id line rep pheno 1 358 1 LL 3 358 2 LL 14 380 1 LL 15 380 2 LL 25 441 ...
edger model rank written 9 weeks ago by philip.freda0

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