User: mnaymik

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mnaymik0
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Posts by mnaymik

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DeSeq2 independant filtering barely removes any genes
... I have a data set where I am comparing a few exposures to a basleine group. When I run Deseq on all of the groups it filters out about 20,000 of the 36,000 genes which is what I expect and has always been the case when running Deseq. However, for 1 of the contrasts only 200 genes get filtered out. L ...
deseq2 differential gene expression filtering written 5 months ago by mnaymik0 • updated 5 months ago by Michael Love20k
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Gviz Custom ordering of features in Annotationtrack
... The AnnotationTrack is ordering my stack of features for me but I want the features to be stacked in a specific order. I would like the same order that my start, end, and group vectors are given to the constructor (which I have pre-sorted by longest to shortest feature length). How could I do this? ...
gviz gviz-package written 16 months ago by mnaymik0

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