User: AntonS

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AntonS0
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Posts by AntonS

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Answer: A: Simple UCSC to transcript annotation
... Thank you, but this object is again nested in at least 3 levels and horrible to handle. Never had a such hard to handle package. Now I just need a simple data.frame Chr     ExonStart     ExonEnd     ExonNr     Gene ...
written 2.3 years ago by AntonS0
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Simple UCSC to transcript annotation
... Hi,   I tried to find the solution on my own, but I think the whole tdx, annotationdb, ... are circuitous. I have a chromosomal location (chr1:48902063-48902085, chr2:202340342-202340364, ....) and I just want to know, whether this region is an exon. Is there a simple command to do it?   Best r ...
annotation ucsc transcripts tdx written 2.3 years ago by AntonS0

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