User: abelew

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abelew40
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2 years, 3 months ago
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Posts by abelew

<prev • 4 results • page 1 of 1 • next >
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Comment: C: OrgDB download failed via AnnotationHub
... Greetings! When I was poking around in my own R session, I primarily did AnnotationHub::query() followed by mcols() just because that is what I first learned; so I found it neat to see a different way of thinking about how to filter the ah instance. With respect to the version number discrep ...
written 25 days ago by abelew40
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Comment: C: OrgDB download failed via AnnotationHub
... TL;DR; The fungidb website returns to you the union of the GO and GOSLIM tables. As of now, the OrgDb data that I generate only has the GO table. While answering below, I figured out how to get the GOSLIM data, and will be adding that in future revisions. Here is the long version: Greetings! ...
written 26 days ago by abelew40
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Comment: C: OrgDB download failed via AnnotationHub
... Hello Chirag, Unfortunately, when the eupathdb moved to the current REST api for downloading annotation data, the ability to specify the version for that information was lost. I wrote the eupathdb.org perhaps two years ago asking about how I might specify the version and at the time it was impo ...
written 4 weeks ago by abelew40
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Comment: C: OrgDB download failed via AnnotationHub
... Greetings, I spent some time hunting down the errors for these resources and found that they fall into two classes. First. fungidb.org does not have transcript data for: Coccidioides.immitis.RMSCC.2394, Coccidioides.immitis.RMSCC.3703, Cryptococcus.neoformans.var.neoformans.B.3501A, Coccidio ...
written 3 months ago by abelew40

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