User: shawn.w.foley

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Posts by shawn.w.foley

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Comment: C: FGSEA only runs with <1000 permutations
... Running fgsea with BPPARAM = SnowParam() works with no problem! Thank you for the help. ...
written 3 months ago by shawn.w.foley0
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Comment: C: FGSEA only runs with <1000 permutations
... I'm having the same issue when I run example("bplapply") where the command is not completing. I've reinstalled BiocParallel with no change, the output is shown below. Do you have any advice? Thank you! > library(BiocParallel) > example("bplapply") bplppl> showMethods("bplapply") Function ...
written 3 months ago by shawn.w.foley0
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FGSEA only runs with <1000 permutations
... Hello, I’ve downloaded the library from Bioconductor directly using the biocLite command and am currently running it in R version 3.3.3 “Another Canoe.” When running the fgsea command the algorithm runs quickly (less than 1 second) for any number of permutations less than 1000, only taking 1.46 se ...
gsea fgsea written 3 months ago by shawn.w.foley0 • updated 3 months ago by assaron130

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