User: Alexandra

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Alexandra0
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Posts by Alexandra

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Comment: C: Annotate gene counts
... Hi, Thank you for your reply and for correcting the tags. I was aware that my keys were in a different format (or so I think)- e.g. "transcript:F31C3.9" instead of something like "B0240b". My problem is not being able to add Entrez Gene IDs to the DeSeq object. The initial raw count table I pass t ...
written 2.2 years ago by Alexandra0
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Annotate gene counts
...   Hi, I am trying to analyse and RNASeq data set using DeSeq2. I would like to have the annotated genes in heat maps and also for making a HTML report using ReportingTools, but I am not sure how to pass an already annotated matrix to DESeqDataSetFromMatrix() or how to annotate the results after I ...
rnaseq annotation annotationdbi written 2.2 years ago by Alexandra0 • updated 2.2 years ago by Michael Love25k

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Popular Question 2.2 years ago, created a question with more than 1,000 views. For Annotate gene counts

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