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Comment:
Comment: PCA of different bacterial species
1 day ago
ATpoint
★ 4.0k
2
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0
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156
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Answer:
Answer: Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Compari
3 days ago
ATpoint
★ 4.0k
0
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1
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184
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Comment:
Comment: EDAseq to normalise for both gene-length and GC-content
8 days ago
ATpoint
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1
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184
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Comment:
Comment: EDAseq to normalise for both gene-length and GC-content
8 days ago
ATpoint
★ 4.0k
1
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0
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159
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Comment:
Comment: Extracting genomic sequences using agat and bedtools yields different results
8 days ago
ATpoint
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0
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178
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Comment:
Comment: Help with Complex DESeq2 Design
8 days ago
ATpoint
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0
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141
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Comment:
Comment: Visium RNA
9 days ago
ATpoint
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2.1k
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Comment:
Comment: Fail BiocManager::install(version='3.12')
12 days ago
ATpoint
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247
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Comment:
Comment: Missing Band on Volcano Plot from DESeq2
15 days ago
ATpoint
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1
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174
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Comment:
Comment: Scores used for DiffBind's dba.plotHeatmap
15 days ago
ATpoint
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1
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161
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Answer:
Answer: RNA sequencing raw counts gene filtering
15 days ago
ATpoint
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166
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Answer:
Answer: i'm not getting any differentially expressed genes.
16 days ago
ATpoint
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2
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191
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Answer:
Answer: Creating data matrix in Deseq2 from tximport data invalid class SummarizedExperi
16 days ago
ATpoint
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1
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160
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Answer:
Answer: Perform PCA for sample clustering using DESeq2
17 days ago
ATpoint
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152
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Comment:
Comment: Rcpp compilation error
20 days ago
ATpoint
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136
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Answer:
Answer: DESeq2 for pseudobulk analysis of scCITE-seq
21 days ago
ATpoint
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294
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Comment:
Comment: DESeq and SVA for batch effect
21 days ago
ATpoint
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0
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150
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Answer:
Answer: Unusually large fold-changes in Deseq2 results
21 days ago
ATpoint
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0
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1
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266
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Comment:
Comment: Factor vs Character in design
22 days ago
ATpoint
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0
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0
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293
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Answer:
Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
26 days ago
ATpoint
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1
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1
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265
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Comment:
Comment: Further clarification of unbalanced group sizes DESeq2
28 days ago
ATpoint
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0
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1
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265
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Answer:
Answer: Further clarification of unbalanced group sizes DESeq2
28 days ago
ATpoint
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0
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0
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215
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Comment:
Comment: How to select cells that represents more accurately a cluster in a scRNA-seq dat
4 weeks ago
ATpoint
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0
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1
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264
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Comment:
Comment: problem in installing the new version of bioconductor
4 weeks ago
ATpoint
★ 4.0k
1
vote
0
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310
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Answer:
Answer: Filter genes that have >= 1 cpm and are expressed in 80% of the case in the grou
5 weeks ago
ATpoint
★ 4.0k
0
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0
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294
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Comment:
Comment: vst transformation and zero counts
5 weeks ago
ATpoint
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1
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1
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426
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Comment:
Comment: Average biological replicates in RNA-seq
5 weeks ago
ATpoint
★ 4.0k
0
votes
1
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426
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Comment:
Comment: Average biological replicates in RNA-seq
5 weeks ago
ATpoint
★ 4.0k
2
votes
1
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426
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Answer:
Answer: Average biological replicates in RNA-seq
5 weeks ago
ATpoint
★ 4.0k
0
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0
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200
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Answer:
Answer: Problems with filtering DESeq Results (log2fold change)
5 weeks ago
ATpoint
★ 4.0k
0
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0
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140
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Answer:
Answer: Inconsistency in DESeq2 Log fold change
5 weeks ago
ATpoint
★ 4.0k
0
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0
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216
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Answer:
Answer: DESeq2 Results in Different Pvalue & Log2FC using the same code and data
6 weeks ago
ATpoint
★ 4.0k
1
vote
1
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497
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Comment:
Comment: How do you post on this forum?
6 weeks ago
ATpoint
★ 4.0k
0
votes
0
replies
182
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Comment:
Comment: WGCNA | plotDendroAndColors ERROR
7 weeks ago
ATpoint
★ 4.0k
2
votes
1
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281
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Answer:
Answer: Graphing DEseq2 Normalized Counts using ggplot2
7 weeks ago
ATpoint
★ 4.0k
0
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0
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6.0k
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Comment:
Comment: GSEA many significant gene sets despite no differentially expressed genes
7 weeks ago
ATpoint
★ 4.0k
0
votes
1
reply
286
views
Comment:
Comment: DESeq2 nomalize value
7 weeks ago
ATpoint
★ 4.0k
0
votes
1
reply
286
views
Answer:
Answer: DESeq2 nomalize value
7 weeks ago
ATpoint
★ 4.0k
0
votes
1
reply
202
views
Answer:
Answer: Cross-species analysis using DESeq2 - size factor computation
8 weeks ago
ATpoint
★ 4.0k
0
votes
0
replies
215
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Comment:
Comment: WGCNA Soft Power
9 weeks ago
ATpoint
★ 4.0k
0
votes
1
reply
471
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Comment:
Comment: Merging of Human and Mouse SingleCellExperiment Objects Error
10 weeks ago
ATpoint
★ 4.0k
0
votes
0
replies
385
views
Comment:
Comment: Batch-resolved visualization after RUVg normalization?
10 weeks ago
ATpoint
★ 4.0k
1
vote
2
replies
385
views
Comment:
Comment: Batch-resolved visualization after RUVg normalization?
10 weeks ago
ATpoint
★ 4.0k
0
votes
1
reply
334
views
Answer:
Answer: scran package: quickCluster and calculateSumFactors parallelization
11 weeks ago • updated 10 weeks ago
ATpoint
★ 4.0k
0
votes
0
replies
190
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Comment:
Comment: Conversion of .sf to .rgel format for the salmon processed files with transcript
11 weeks ago
ATpoint
★ 4.0k
0
votes
0
replies
448
views
Comment:
Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
11 weeks ago
ATpoint
★ 4.0k
0
votes
1
reply
345
views
Comment:
Comment: DESeq2 Normalization for QC Samples
11 weeks ago
ATpoint
★ 4.0k
0
votes
1
reply
448
views
Comment:
Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
11 weeks ago
ATpoint
★ 4.0k
2
votes
1
reply
463
views
Answer:
Answer: DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
11 weeks ago
ATpoint
★ 4.0k
0
votes
1
reply
587
views
Comment:
Comment: Bioconductor installation
11 weeks ago
ATpoint
★ 4.0k
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