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169
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Answer: Answer: Inconsistency in DESeq2 Log fold change
9 weeks ago ATpoint ★ 4.0k
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241
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Answer: Answer: DESeq2 Results in Different Pvalue & Log2FC using the same code and data
10 weeks ago ATpoint ★ 4.0k
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571
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Comment: Comment: How do you post on this forum?
10 weeks ago ATpoint ★ 4.0k
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0
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243
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Comment: Comment: WGCNA | plotDendroAndColors ERROR
10 weeks ago ATpoint ★ 4.0k
2
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380
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Answer: Answer: Graphing DEseq2 Normalized Counts using ggplot2
11 weeks ago ATpoint ★ 4.0k
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6.4k
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Comment: Comment: GSEA many significant gene sets despite no differentially expressed genes
11 weeks ago ATpoint ★ 4.0k
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333
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Comment: Comment: DESeq2 nomalize value
11 weeks ago ATpoint ★ 4.0k
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333
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Answer: Answer: DESeq2 nomalize value
11 weeks ago ATpoint ★ 4.0k
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243
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Answer: Answer: Cross-species analysis using DESeq2 - size factor computation
12 weeks ago ATpoint ★ 4.0k
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271
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Comment: Comment: WGCNA Soft Power
3 months ago ATpoint ★ 4.0k
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1
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546
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Comment: Comment: Merging of Human and Mouse SingleCellExperiment Objects Error
3 months ago ATpoint ★ 4.0k
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0
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443
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Comment: Comment: Batch-resolved visualization after RUVg normalization?
3 months ago ATpoint ★ 4.0k
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2
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443
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Comment: Comment: Batch-resolved visualization after RUVg normalization?
3 months ago ATpoint ★ 4.0k
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407
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Answer: Answer: scran package: quickCluster and calculateSumFactors parallelization
3 months ago ATpoint ★ 4.0k
0
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222
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Comment: Comment: Conversion of .sf to .rgel format for the salmon processed files with transcript
3 months ago ATpoint ★ 4.0k
0
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0
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519
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Comment: Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
3 months ago ATpoint ★ 4.0k
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1
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396
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Comment: Comment: DESeq2 Normalization for QC Samples
3 months ago ATpoint ★ 4.0k
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519
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Comment: Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
3 months ago ATpoint ★ 4.0k
2
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1
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592
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Answer: Answer: DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
3 months ago ATpoint ★ 4.0k
0
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1
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694
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Comment: Comment: Bioconductor installation
3 months ago ATpoint ★ 4.0k
0
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1
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519
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Answer: Answer: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
3 months ago ATpoint ★ 4.0k
0
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0
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413
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Comment: Comment: DESeq with multiple condition
3 months ago ATpoint ★ 4.0k
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1
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413
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Answer: Answer: DESeq with multiple condition
4 months ago ATpoint ★ 4.0k
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0
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655
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Comment: Comment: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
4 months ago ATpoint ★ 4.0k
1
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0
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388
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Answer: Answer: Deseq2 -Model matrix not full rank error: A complex case
4 months ago ATpoint ★ 4.0k
2
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1
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472
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Answer: Answer: lfcSE always positive. Does this make sense?
4 months ago ATpoint ★ 4.0k
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1
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570
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Answer: Answer: Read Count Normalisation and validation of analysis
4 months ago ATpoint ★ 4.0k
0
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1
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655
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Answer: Answer: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
4 months ago ATpoint ★ 4.0k
1
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0
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447
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Answer: Answer: DESeq2: the model matrix is not full rank issue
4 months ago ATpoint ★ 4.0k
0
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0
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767
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Comment: Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
4 months ago ATpoint ★ 4.0k
0
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1
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767
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Answer: Answer: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
4 months ago ATpoint ★ 4.0k
1
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0
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490
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Comment: Comment: Different genes expression with limma
4 months ago ATpoint ★ 4.0k
0
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0
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321
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Answer: Answer: tximport error with rsem files
4 months ago ATpoint ★ 4.0k
0
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0
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328
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Answer: Answer: Running DESeq on normalized data
4 months ago ATpoint ★ 4.0k
1
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1
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317
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Comment: Comment: Inconsistent results in DiffBind
4 months ago ATpoint ★ 4.0k
0
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0
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287
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Comment: Comment: Can't download Bioconductor
4 months ago ATpoint ★ 4.0k
0
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2
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877
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
4 months ago ATpoint ★ 4.0k
0
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1
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877
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
4 months ago ATpoint ★ 4.0k
0
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1
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1.6k
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Comment: Comment: JoinLayers function for Seurat Object for annotation with SingleR
4 months ago ATpoint ★ 4.0k
0
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0
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505
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Comment: Comment: DESeq2 : stat or lfcshrink for GSEA analysis
4 months ago ATpoint ★ 4.0k
4
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0
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862
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Answer: Answer: WGCNA documentation not available
4 months ago ATpoint ★ 4.0k
1
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1
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777
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Answer: Answer: ScRNAseq analysis scran :: quickcluster Error
4 months ago ATpoint ★ 4.0k
1
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0
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341
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Comment: Comment: DiffBind getting Fold values of near 0
4 months ago ATpoint ★ 4.0k
1
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1
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1.2k
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Answer: Answer: SingleR annotation of several slots/patients
4 months ago ATpoint ★ 4.0k
0
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1
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561
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Answer: Answer: How does Deseq2 deal with the row with zero when calculating size factors
4 months ago ATpoint ★ 4.0k
0
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1
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617
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Comment: Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
4 months ago ATpoint ★ 4.0k
1
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0
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320
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Answer: Answer: Differential gene expression analysis
4 months ago ATpoint ★ 4.0k
0
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0
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357
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Comment: Comment: bam or VCF files from GSE75010
4 months ago ATpoint ★ 4.0k
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1
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672
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Answer: Answer: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i
4 months ago ATpoint ★ 4.0k
0
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1
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300
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Answer: Answer: WGCNA less samples
5 months ago ATpoint ★ 4.0k
890 results • Page 2 of 18
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