User: Adam_M

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Adam_M0
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Posts by Adam_M

<prev • 6 results • page 1 of 1 • next >
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Methylation data visualization using methyAnalysis with minfi
... Hello, I'd like to perform some nice visualization of my methylation data - Illumina EPIC array. I analyze my data using minfi package, so at the end I have GenomicRatioSet, MethylSet and other. The problem is MethyGenoSet object which ios hard to obtain... Of course there is an easy way, jus anal ...
microarray minfi methyanalysis illumina methylation written 6 months ago by Adam_M0 • updated 6 months ago by Ou, Jianhong1.1k
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Comment: C: Two microarrays merging (different experiments) - Error with esets (inSilicoMerg
... Thank you for the response and suggestion. ...
written 6 months ago by Adam_M0
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Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
... Hello, I'd like to combine two microarrays (same platform and chip) - two different experiments. Currently I have results of two experiments (Affy U133 Plus 2.0) performed in two different labs. I'd like to combine them into one with batch effect correction. I'd like to perform MDS, PCA and other ...
microarray insilicomerging affymetrix microarrays written 6 months ago by Adam_M0 • updated 6 months ago by James W. MacDonald50k
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Comment: C: InSilicoMerging error when using merge
... The function merge() from insilicodb is obscured by basic R merge, try to run inSilicoMerging::merge(esets, method="NONE") ...
written 6 months ago by Adam_M0
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Answer: A: How to find nearest CpG islands around miRNA genes using granges?
... Julie, I read the documentation and this function returned what I needed. Thank you so much, great package! ...
written 22 months ago by Adam_M0
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How to find nearest CpG islands around miRNA genes using granges?
... Hello, I'm trying to find the nearest CpG islands around each miRNA of interest(gene) and also return distance between them. For example for hsa-mir-137 the nearest CpG islands are 73 and 91 where CpG 73 overlaps with this miRNA gene and CpG 91 is ~7500 bp away. What is more is it possible to filte ...
granges R bioconductor written 22 months ago by Adam_M0

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