User: crouch.k

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crouch.k0
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Posts by crouch.k

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Comment: C: Why is DESeq2 not using the beta prior to shrink log2fc?
... Thanks for the link -  that makes sense.  Out of interest, I am using betaPrior=TRUE in the DESeq call at the moment.  Would you recommend using the lfcShrink() function separately instead? ...
written 9 weeks ago by crouch.k0
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Comment: C: Why is DESeq2 not using the beta prior to shrink log2fc?
... Ah - thanks!  I thought I had probably missed something stupid :)  ...
written 9 weeks ago by crouch.k0
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Why is DESeq2 not using the beta prior to shrink log2fc?
... Hi all   Idiocy alert, I think...! I am running a very simple differential expression experiment.  There are two conditions, neg and pos with three replicates of each and the experimental design is a simple ~ condition.  I am using counts from htseq-count. For whatever reason, DESeq2 is not usin ...
normalization deseq2 written 9 weeks ago by crouch.k0 • updated 9 weeks ago by Steve Lianoglou12k

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