User: sgupt46

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sgupt460
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Posts by sgupt46

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Comment: C: biomaRt error in getBM for hsapiens_gene_ensembl
... I installed the new version and used the settings as you suggested. I still have the same issue. My session info is: Session info ----------------------------------------------------------------  setting  value                         version  R version 3.4.2 (2017-09-28)  system   x86_64, mingw32  ...
written 1 day ago by sgupt460
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Comment: C: biomaRt error in getBM for hsapiens_gene_ensembl
... I see the same error when I use the getLDS() function to get mouse homologs for human gene list. getLDS(attributes = c("hgnc_symbol","chromosome_name", "start_position"), filters = "hgnc_symbol", values = "TP53", mart = human,      attributesL = c("chromosome_name","start_position"), martL = mouse) ...
written 2 days ago by sgupt460
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Comment: C: mzR installation problem
... I tried the command you suggested on the terminal. After this if I try to install mzR in R, it just doesn't stop seems like it has gone into some circular loop. ...
written 8 weeks ago by sgupt460
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Plot per-base-coverage output of a bed file of whole genome
... Hi,  I have a bed file which I converted to genomic ranges and ran coverage function to get the coverage of per base. How to visualize the per-base-coverage? Per-base-coverage visualization would be tough due to the huge size. Is there any function which plot coverage for each 10kB intervals? Than ...
coverage bed written 4 months ago by sgupt460 • updated 4 months ago by James W. MacDonald45k

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