User: sgupt46

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sgupt460
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Posts by sgupt46

<prev • 5 results • page 1 of 1 • next >
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Answer: A: Differential expression testing for groups with unequal variances/dispersions?
... Hi, I also have the same question. Were you able to find, what should be done in this case? ...
written 3 months ago by sgupt460
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Comment: C: biomaRt error in getBM for hsapiens_gene_ensembl
... I installed the new version and used the settings as you suggested. I still have the same issue. My session info is: Session info ----------------------------------------------------------------  setting  value                         version  R version 3.4.2 (2017-09-28)  system   x86_64, mingw32  ...
written 7 months ago by sgupt460
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Comment: C: biomaRt error in getBM for hsapiens_gene_ensembl
... I see the same error when I use the getLDS() function to get mouse homologs for human gene list. getLDS(attributes = c("hgnc_symbol","chromosome_name", "start_position"), filters = "hgnc_symbol", values = "TP53", mart = human,      attributesL = c("chromosome_name","start_position"), martL = mouse) ...
written 7 months ago by sgupt460
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Comment: C: mzR installation problem
... I tried the command you suggested on the terminal. After this if I try to install mzR in R, it just doesn't stop seems like it has gone into some circular loop. ...
written 9 months ago by sgupt460
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Plot per-base-coverage output of a bed file of whole genome
... Hi,  I have a bed file which I converted to genomic ranges and ran coverage function to get the coverage of per base. How to visualize the per-base-coverage? Per-base-coverage visualization would be tough due to the huge size. Is there any function which plot coverage for each 10kB intervals? Than ...
coverage bed written 11 months ago by sgupt460 • updated 11 months ago by James W. MacDonald46k

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