User: jspmccain

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jspmccain0
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Posts by jspmccain

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Extract whether list element is MS1 or MS2 from mzR::peaks() output
... I'm working the R package mzR for extracting raw data from a mzMXL file. I'd like to examine the distribution of ion intensities from MS1 only, is there a way to differentiate the MS1 scans from MS2 scans via the *peaks()* function? Right now I'm just filtering the elements of the list by the range ...
mzr written 15 days ago by jspmccain0 • updated 14 days ago by Laurent Gatto840
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Using Normalized Values in DeSeq2 - Metatranscriptomics
... I am analyzing a time series of a metatranscriptome. In metatranscriptomics, we have to do the regular normalizations found in RNA-Seq (ie. gene sequence length, and sample-differences in total expression). However, there is an additional normalization required to account for changes in species abun ...
deseq2 written 9 weeks ago by jspmccain0 • updated 9 weeks ago by Michael Love14k

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