User: Andrew Box

gravatar for Andrew Box
Andrew Box0
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Location:
Kansas City, MO - Stowers Institute for Medical Research
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1 week ago
Joined:
4 months ago
Email:
a**@stowers.org

Posts by Andrew Box

<prev • 5 results • page 1 of 1 • next >
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flowCore estimate logicle - error in getChannelMarker
... Hi, I'm trying to use an approach I've used in the past to transform parameters in flowCore, but I get an error after running estimateLogicle that states Error in getChannelMarker(x, channel) : can't find *593/40 [YG] I get this message whether I specify one or several channels to transform, I've ...
flowcore flow cytometry transformation written 7 days ago by Andrew Box0 • updated 6 days ago by SamGG90
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Answer: A: get vertex xy coords from igraph mst plot
... layout <- layout_with_fr(mymst, dim = 2, niter = 500) This is what I was looking for.  Part of the mistake I was making was running the layout on my original graph object 'g', not the mst graph object 'mymst'.   Layout now contains the x and y coordinates for the vertices of the minimum spannin ...
written 7 weeks ago by Andrew Box0
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get vertex xy coords from igraph mst plot
... I'm interested in getting the X and Y coordinates from a minimum spanning tree to use for some non-igraph plotting and export for merging with another data set.  However, I'm having trouble understanding how to obtain the coordinates from the graph object.  It seems that typically, the layout would ...
igraph written 7 weeks ago by Andrew Box0
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Opencyto - detector name not found in flow data, but pretty sure it's there
... Hi, I've saved a wsp workspace in flowjo X that I'm attempting to import into R using opencyto using this code below.  The files are from a ZE5 analyzer. flowDataPath <- getwd() wsfile <- list.files(flowDataPath, pattern="FJ.wsp",full = TRUE) ws <- openWorkspace(wsfile) gs <- parseWorks ...
flowcore opencyto flow cytometry written 8 weeks ago by Andrew Box0 • updated 14 days ago by jd8410290
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Using inverse logicle in flowCore
... Hi, I'm using flowCore and flowStats to transform a few parameters and normalize them to 'line up the peaks' using the gaussNorm function in the flowStats package.  I'd like to be able to apply an inverse logicle when I'm finished to undo the transformation so I can re-export the normalized files an ...
flowcore flow cytometry logicle transformation written 3 months ago by Andrew Box0 • updated 3 months ago by Jiang, Mike1.0k

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