User: Haibo.Liu

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Haibo.Liu0
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Answer: A: Using IRanges to find gene TSS that overlap a window
... Yes, ChIPpeakAnno will do the job for you. First treat your defined range windows as ChIP peak ranges (for input format, see the manual of ChIPpeakAnno). Then convert the ranges to a GRanges object with toGRanges() function. peaks <- toGRanges(yourfile, format="broadPeak")  ## your file is the ...
written 3 months ago by Haibo.Liu0

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