User: Haibo.Liu

gravatar for Haibo.Liu
Haibo.Liu0
Reputation:
0
Status:
New User
Location:
Last seen:
4 months, 3 weeks ago
Joined:
1 year, 1 month ago
Email:
H********@umassmed.edu

Posts by Haibo.Liu

<prev • 2 results • page 1 of 1 • next >
0
votes
2
answers
240
views
2
answers
Answer: A: ATACseqQC memory overflow issue
... Please refer to my git hub scripts: https://github.com/seaYali/ATACseqQC/blob/master/ScriptsForATACseqQCCaseStudy.txt for your analysis. Currently, the bottle neck of this package is the BamQC.R function. I did this step using samtools instead for efficinecy. Importantly, for the purpose of QC, You ...
written 7 months ago by Haibo.Liu0
0
votes
2
answers
530
views
2
answers
Answer: A: Using IRanges to find gene TSS that overlap a window
... Yes, ChIPpeakAnno will do the job for you. First treat your defined range windows as ChIP peak ranges (for input format, see the manual of ChIPpeakAnno). Then convert the ranges to a GRanges object with toGRanges() function. peaks <- toGRanges(yourfile, format="broadPeak")  ## your file is the ...
written 13 months ago by Haibo.Liu0

Latest awards to Haibo.Liu

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 345 users visited in the last hour