User: vinayjrao

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vinayjrao0
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Posts by vinayjrao

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Ballgown Error in file(file, "rt") : invalid 'description' argument
... Hi, I am trying out the new tuxedo protocol (hisat, stringtie and ballgown). While calling the ballgown function with bg_chrX = ballgown(dataDir = "ballgown", samplePattern = "ERR", pData=pheno_data) I get Error in file(file, "rt") : invalid 'description' argument Any help in this regard would ...
rna-seq ballgown written 11 weeks ago by vinayjrao0 • updated 11 weeks ago by Alyssa Frazee110
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Installing old versions of cummeRbund
... Hi, I'm running RNA-Seq data analysis using the old tuxedo protocol, which requires cummeRbund. My current version is 2.18 (not working for me), but I want to install 2.12.1 (this version works for me). Any suggestions on how it can be done? Thanks. P.S. This question has also been asked on biost ...
cummerbund rna-seq written 3 months ago by vinayjrao0 • updated 3 months ago by James W. MacDonald45k

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