User: khandarius

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khandarius20
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9 months ago
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Posts by khandarius

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Comment: C: limma barcodeplot(): calculation of enrichment score
... Thank you Gordon. I don't know how I missed this post... ...
written 9 months ago by khandarius20
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limma barcodeplot(): calculation of enrichment score
... Hello,   I've performed gene set enrichment analysis with the limma-package's camera -function. I'm using limma's barcodeplot -function to visualize my results (one index set, no gene weights). I would like to know how the enrichment score on the plot (y-axis) is calculated - I can't find any ment ...
limma gene set enrichment analysis written 9 months ago by khandarius20 • updated 9 months ago by Aaron Lun24k
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MAST: testing differential expression with a nested factorial design
... Hello MAST team, I would like to use MAST for testing differential expression between cells from two treatment groups. The data is from a nested factorial design, and I would like to know how to best take the structure of the data into account. Each of the two treatment groups have cells from thre ...
rna-seq single-cell mast written 15 months ago by khandarius20 • updated 15 months ago by Andrew_McDavid190
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Comment: C: Bioconductor version too old
... Hi, I have the exact same problem with R 3.4.2 on Ubuntu16.04 LTS. I've tried all suggested solutions. Any ideas for correcting this? My sessionInfo(): R version 3.4.2 (2017-09-28) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 16.04.2 LTS Matrix products: default BLAS: /usr/lib/ ...
written 20 months ago by khandarius20

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