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User: snguyen268

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Posts by snguyen268

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GSEA-class file (.cls) parsing error message
... Hi all, I am creating a .cls file for my GSEA analysis and see the below error. Can anyone suggest a solution? I create the file using TeXworks. The file looks like this: 37 2 1 #CD69neg CD69pos CD69neg CD69pos CD69pos CD69pos CD69neg CD69pos CD69pos CD69pos CD69pos CD69neg CD69neg CD69neg CD69 ...
gsea written 13 months ago by snguyen268 • 0
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Comment: C: ENSEMBL causing issues replicating previous results
... Hi all, Thanks for your reply. I don't think it is the Ensembl archive sites either because most of the results are pretty much similar to what I got before. However, there are differences that I can't really reconcile. For example, the term "mRNA catabolic process" had 218 annotated term before, ...
written 14 months ago by snguyen268 • 0
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Answer: A: ENSEMBL causing issues replicating previous results
... Hi all, Thank you for your answer. I have upgraded my biomaRt to the newest version. It seems like somehow the GO annotation is different that affects my results. Does ENSEMBL modify their archive servers as well? ...
written 14 months ago by snguyen268 • 0
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ENSEMBL causing issues replicating previous results
... Hi all, I have a quite novice question: I am aware that ENSEMBL has recently release a new version (ENSEMBL 91). Since then I have been having trouble reproducing my results from the GO analysis (using topGO package). Potentially, this could be due to me upgrading Bioconductor as well (but I think ...
topgo R ensembl written 14 months ago by snguyen268 • 0

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