User: zhangly811

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zhangly8110
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Posts by zhangly811

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Diffbind: How to compare the DBs called with and without a blocking factor
... Hi, I'm doing a differential binding analysis between two experimental conditions across multiple (~5) cell lines. I'm interested in the highly conserved DBs across all cell lines as well as the DBs that are unique to each cell line. I have tried the blocking factor in diffbind, and got two lists of ...
diffbind differential binding analysis blocking written 22 months ago by zhangly8110 • updated 22 months ago by Rory Stark2.9k
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Comment: C: csaw: how does unequal sample size affect filtering filterWindows step
... Thanks Aaron for the detailed explanation! ...
written 2.2 years ago by zhangly8110
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csaw: how does unequal sample size affect filtering filterWindows step
... Hi, I have been using "csaw" to compare ChIP-Seq samples from two conditions. However, I have 2 samples in one condition, and 3 samples in the other condition, no control (input). I'm concerned with the independent filtering step done by filterWindows, which does independent filtering by averaging t ...
independent filtering statistical power csaw sample size differential binding analysis written 2.2 years ago by zhangly8110 • updated 2.2 years ago by Aaron Lun25k

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