User: NathL

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NathL0
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Posts by NathL

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Comment: C: Error when merging SCESet objects
... Thank you, it finally works! The problem came from the fact that I used a bash command (with sed) to modify the barcodes names in the file barcodes.tsv. And when running read10XResults, this error appears and the SCESet object cannot be built.  ...
written 7 weeks ago by NathL0
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Comment: C: Error when merging SCESet objects
... I've been away for a while and just checked by adding sort of "Exp1-ACACTGCGACT-1" to each barcode, but another error appears :  Error in data.frame(numeric(n), row.names = nms) : duplicate row.names: Exp1 I checked the code of the read10xResults function on GitHub but cannot really figure out ...
written 7 weeks ago by NathL0
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Comment: C: Error when merging SCESet objects
...  Ok, thank you for these very clear explanations. Do you actually have an idea when will be the next scater release ?  ...
written 9 weeks ago by NathL0
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Error when merging SCESet objects
... I am using R version 3.4.1, Bioconductor 3.5 and RStudio to use scater package. I have 7 single-cell RNA seq datasets (from a 10x Genomics experiment), each corresponding to a different time point. Each dataset is a SCESet object. I want to merge the data all together. I have found there is the merg ...
single-cell scater written 9 weeks ago by NathL0 • updated 9 weeks ago by Aaron Lun17k

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