User: NathL

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NathL0
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Posts by NathL

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Comment: C: Error when merging SCESet objects
... Thank you, it finally works! The problem came from the fact that I used a bash command (with sed) to modify the barcodes names in the file barcodes.tsv. And when running read10XResults, this error appears and the SCESet object cannot be built.  ...
written 12 months ago by NathL0
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Comment: C: Error when merging SCESet objects
... I've been away for a while and just checked by adding sort of "Exp1-ACACTGCGACT-1" to each barcode, but another error appears :  Error in data.frame(numeric(n), row.names = nms) : duplicate row.names: Exp1 I checked the code of the read10xResults function on GitHub but cannot really figure out ...
written 12 months ago by NathL0
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Comment: C: Error when merging SCESet objects
...  Ok, thank you for these very clear explanations. Do you actually have an idea when will be the next scater release ?  ...
written 13 months ago by NathL0
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Error when merging SCESet objects
... I am using R version 3.4.1, Bioconductor 3.5 and RStudio to use scater package. I have 7 single-cell RNA seq datasets (from a 10x Genomics experiment), each corresponding to a different time point. Each dataset is a SCESet object. I want to merge the data all together. I have found there is the merg ...
single-cell scater written 13 months ago by NathL0 • updated 13 months ago by Aaron Lun21k

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