User: fawazfebin

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fawazfebin30
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Posts by fawazfebin

<prev • 29 results • page 2 of 3 • next >
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Comment: C: Analysis using TCGAbiolinks
...   Great thanks Antonio for the specific code. Can I know whether there is only gene expression data available for triple negative breast cancer?   ...
written 9 weeks ago by fawazfebin30
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Comment: C: Analysis using TCGAbiolinks
... Thanks for the help. I will be grateful if you could provide the code. ...
written 9 weeks ago by fawazfebin30
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Analysis using TCGAbiolinks
... Hi  I would like to analyse all the available triple negative breast cancer data sets in TCGA using TCGAbiolinks . I couldnt find the option for this type of cancer in their manual. Can anyone help please ? Thanks in advance ...
tcgabiolinks triple negative breast cancer data sets written 9 weeks ago by fawazfebin30 • updated 9 weeks ago by antonio.colaprico40
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Comment: C: Design of 'group' object in DGElist function
... Thanks a lot. I was a bit confused on multiple factors. The third chapter helped. ...
written 3 months ago by fawazfebin30
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Comment: C: Adding gene names which are differentially expressed in the plot
... I would like to get a scatterplot with gene names.Thanks in advance ...
written 3 months ago by fawazfebin30
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Adding gene names which are differentially expressed in the plot
... Hi Can anyone please guide me on plotting a graph showing the gene names of top differentially expressed genes in edgeR ?     ...
edger plot differential gene expression written 3 months ago by fawazfebin30
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Answer: A: No genes found in universe : goana error
... I was able to solve it by giving the column name of ENTREZID  for "geneid " in goana function.  ...
written 3 months ago by fawazfebin30
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Answer: A: RNA Seq analysis vs. Single cell RNA seq analysis
... Great thanks ! ...
written 3 months ago by fawazfebin30
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Design of 'group' object in DGElist function
... Hi I have two replicates for two conditions ( resistant and sensitive ) at two time intervals for conducting a Differential Expression analysis using edgeR. How do I assign the condition for ' group ' in DGElist function? My data would look like R1,R2 vs. S1,S2 at one time interval and R3,R4 vs. S3 ...
rnaseq dgelist group egder written 3 months ago by fawazfebin30 • updated 3 months ago by Aaron Lun18k
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No genes found in universe : goana error
... Hi I was doing a gene ontology analysis on a set of differentially expressed genes. The goana function returns an error saying ," No genes found in universe". Here is the code I ran for differential expression analysis ('countdata' represents the dataframe containing counts of each gene in each of ...
edger gene ontology goana written 4 months ago by fawazfebin30

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