User: fawazfebin

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fawazfebin30
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Posts by fawazfebin

<prev • 43 results • page 3 of 5 • next >
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Comment: C: GDCdownload error in TCGAbiolinks: Invalid zip name argument
... Great thanks! ...
written 22 months ago by fawazfebin30
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GDCdownload error in TCGAbiolinks: Invalid zip name argument
...     Hi I was analysing TNBC data sets usin TCGAbiolinks and got the following error while running GDCdownload command: > GDCdownload(query = queryDown, + directory = DataDirectory) Downloading data for project TCGA-BRCA trying URL 'https://gdc.cancer.gov/system/files/authenticate ...
tcgabiolinks gdcdownload unzip written 22 months ago by fawazfebin30 • updated 22 months ago by Tiago Chedraoui Silva240
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Comment: C: Analysis using TCGAbiolinks
... I got the following warning message while running one of the commands above: > queryDown <- GDCquery(project = CancerProject,  + data.category = "Gene expression", + data.type = "Gene expression quantification", + platform = " ...
written 22 months ago by fawazfebin30
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Comment: C: installation of "airway" had non-zero exit status
... I got the same error while installing "GenomeInfoDbData" . Got it solved by creating a directory and installing in it. ...
written 22 months ago by fawazfebin30
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Comment: C: Analysis using TCGAbiolinks
...   Great thanks Antonio for the specific code. Can I know whether there is only gene expression data available for triple negative breast cancer?   ...
written 22 months ago by fawazfebin30
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Comment: C: Analysis using TCGAbiolinks
... Thanks for the help. I will be grateful if you could provide the code. ...
written 22 months ago by fawazfebin30
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Analysis using TCGAbiolinks
... Hi  I would like to analyse all the available triple negative breast cancer data sets in TCGA using TCGAbiolinks . I couldnt find the option for this type of cancer in their manual. Can anyone help please ? Thanks in advance ...
tcgabiolinks triple negative breast cancer data sets written 22 months ago by fawazfebin30 • updated 22 months ago by antonio.colaprico40
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Comment: C: Design of 'group' object in DGElist function
... Thanks a lot. I was a bit confused on multiple factors. The third chapter helped. ...
written 23 months ago by fawazfebin30
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Comment: C: Adding gene names which are differentially expressed in the plot
... I would like to get a scatterplot with gene names.Thanks in advance ...
written 23 months ago by fawazfebin30
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Adding gene names which are differentially expressed in the plot
... Hi Can anyone please guide me on plotting a graph showing the gene names of top differentially expressed genes in edgeR ?     ...
edger plot differential gene expression written 23 months ago by fawazfebin30

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