User: Weiwei Shi
Weiwei Shi • 1.2k
- Reputation:
- 1,180
- Status:
- Trusted
- Location:
- Last seen:
- 9 years, 9 months ago
- Joined:
- 14 years, 3 months ago
- Email:
- h********@gmail.com
0
votes
1
answer
414
views
1
answer
... Hi,
I am wondering how to get all GO terms (actually for BP category)
after I
run hyperGTest? I need to know what GO terms were checked by
hyperGTest.
BTW, I used summary(x, pvalue=1.1) as a way to find the answer after I
run
hyperGTest for hgu133a, hgu133plus2 and hgu95av2. I found the numbers
fo ...
written 11.2 years ago by
Weiwei Shi • 1.2k
• updated
11.2 years ago by
rgentleman • 5.5k
0
votes
1
answer
997
views
1
answers
... Kyle,
I agree with your reply to question 2 by calculating each "case"
sample or
interested sample's ratio versus a a median intensity from reference
samples. However, my original question also mentioned what if the
experimental design includes for example, different times, different
concentration ...
written 11.3 years ago by
Weiwei Shi • 1.2k
0
votes
1
answer
997
views
1
answer
... Dear all,
I have some questions relating to PGSEA package and GSEA method and
hope to
get some replies:
1. After reading the following paper, I think the theoretical basis
for
PGSEA is very different from GSEA (Broad, MIT). So, my first question
is,
is there a package in bioconductor running GSE ...
written 11.3 years ago by
Weiwei Shi • 1.2k
• updated
11.3 years ago by
Furge, Kyle • 210
0
votes
4
answers
565
views
4
answers
... Actually, making this question more nontrivial is, 1. the lengths for
the
two gene lists are very different; 2. I could add another list as gene
weight to any gene, for example, of union of two gene lists.
On Sun, Aug 24, 2008 at 9:15 AM, Shannon, William
wrote:
> First thought is a similarity ...
written 11.3 years ago by
Weiwei Shi • 1.2k
0
votes
4
answers
565
views
4
answers
... Dear listers,
a little off-topic:
I am looking for and compare algorithms which can calculate "distance"
or
"similarity" between two gene lists with different lengths.
Any paper, any implementation in R and any suggestion is welcome!
Thanks,
--
Weiwei Shi, Ph.D
Research Scientist
GeneGO, Inc.
...
written 11.3 years ago by
Weiwei Shi • 1.2k
• updated
11.3 years ago by
xie weibo • 50
0
votes
1
answer
451
views
1
answer
... Hi,
I have a question about an Agilent rat platform. We are studying a
cross-platform issue and one of the platform is using G4130A, which
bench
scientists provide as limited information. I guess it is rgug4130a but
how
could I confirm this? what rgug stands for?
btw, what's the difference between ...
written 11.4 years ago by
Weiwei Shi • 1.2k
• updated
11.4 years ago by
Marc Carlson • 7.2k
0
votes
0
answers
414
views
0
answers
... Hi,
I am wondering if I can make my own GO "term" and apply all
utilities(packages, functions on GO terms) on my own versions? I mean,
could
I create GeneSet and GeneSet Collection as a collection of GO terms
and
perform some analysis like "hypergeometirc enrichment analysis" on my
own
"terms".
T ...
written 11.4 years ago by
Weiwei Shi • 1.2k
0
votes
1
answer
115
views
1
answer
... An embedded and charset-unspecified text was scrubbed...
Name: not available
Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20080313/
5d779344/attachment.pl ...
written 11.8 years ago by
Weiwei Shi • 1.2k
• updated
11.8 years ago by
James W. MacDonald ♦ 52k
0
votes
1
answer
380
views
1
answers
Answer:
A: Question to RankProd package
... An embedded and charset-unspecified text was scrubbed...
Name: not available
Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20071213/
acc425e3/attachment.pl ...
written 12.0 years ago by
Weiwei Shi • 1.2k
0
votes
2
answers
313
views
2
answers
... An embedded and charset-unspecified text was scrubbed...
Name: not available
Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20071207/
2a5219e6/attachment.pl ...
written 12.0 years ago by
Weiwei Shi • 1.2k
• updated
12.0 years ago by
lgautier@altern.org • 950
Latest awards to Weiwei Shi
Centurion
9.8 years ago,
created 100 posts.
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 16.09
Traffic: 368 users visited in the last hour