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Comment: Comment: DESeq2 contrasts using all relevant samples vs all samples
3.2 years ago swbarnes2 ★ 1.4k
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Answer: Answer: resultsNames(dds) not showing all contrasts
3.2 years ago swbarnes2 ★ 1.4k
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Answer: Answer: DESEq2 rerun gives different results
3.2 years ago swbarnes2 ★ 1.4k
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Comment: Comment: Time course RNA seq with DESeq2
3.2 years ago swbarnes2 ★ 1.4k
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590
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Answer: Answer: DESeq2 comparison of different sample combinations
3.2 years ago swbarnes2 ★ 1.4k
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642
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Answer: Answer: Batch correction in deseq2
3.2 years ago swbarnes2 ★ 1.4k
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Comment: Comment: How to get started with DeseqDataSet import using CSV? Is it necessary to have C
3.3 years ago swbarnes2 ★ 1.4k
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1.5k
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Answer: Answer: what should be our references when 2 samples which I compare are treated and the
3.3 years ago swbarnes2 ★ 1.4k
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990
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Answer: Answer: DESeq2 Interaction Term Error Occurred
3.3 years ago swbarnes2 ★ 1.4k
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2.9k
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Comment: Comment: DESeqDataSetFromMatrix error
3.3 years ago swbarnes2 ★ 1.4k
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2.9k
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Answer: Answer: DESeqDataSetFromMatrix error
3.3 years ago swbarnes2 ★ 1.4k
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1.3k
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Comment: Comment: DiffBind: dba.plotPCA() ellipse
3.3 years ago swbarnes2 ★ 1.4k
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1.4k
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Answer: Answer: Seeking help in multifactor differential gene expression analysis using DESeq2.
3.4 years ago swbarnes2 ★ 1.4k
2
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4.4k
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Comment: Comment: Using Age or other numerical variable to model expression in deseq2
3.4 years ago swbarnes2 ★ 1.4k
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1.7k
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Comment: Comment: I got error message about DESeqDataSetFromMatrix
3.4 years ago swbarnes2 ★ 1.4k
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1.7k
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Answer: Answer: I got error message about DESeqDataSetFromMatrix
3.4 years ago swbarnes2 ★ 1.4k
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869
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Answer: Answer: DESeq2 changing Interaction term interpretation
3.4 years ago swbarnes2 ★ 1.4k
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3.0k
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Answer: Answer: Log2FoldChange and normalized count values are not consistent?
3.4 years ago swbarnes2 ★ 1.4k
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2.3k
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Answer: Answer: Difference between raw counts and featureCounts for DESeq2
3.5 years ago swbarnes2 ★ 1.4k
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1.1k
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Answer: Answer: DESeq2 paired design: Differential list comparing fold changes
3.5 years ago swbarnes2 ★ 1.4k
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4.5k
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Comment: Comment: HTSeq Counts no longer available
3.5 years ago swbarnes2 ★ 1.4k
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Comment: Comment: is it possible to use TPM in DESeq2 ?
3.5 years ago swbarnes2 ★ 1.4k
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13k
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Comment: Comment: is it possible to use TPM in DESeq2 ?
3.5 years ago swbarnes2 ★ 1.4k
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Answer: Answer: DESeq2 how to specify contrast to test difference of differences
3.5 years ago swbarnes2 ★ 1.4k
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3.4k
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Comment: Comment: DESeq2::plotPCA plotting error
3.5 years ago swbarnes2 ★ 1.4k
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3.4k
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Answer: Answer: DESeq2::plotPCA plotting error
3.5 years ago swbarnes2 ★ 1.4k
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0
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6.7k
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Comment: Comment: Best way to do RNA-seq analysis for a small number of samples obtained from 2 di
3.6 years ago swbarnes2 ★ 1.4k
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0
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857
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Answer: Answer: batch effects for a single sample?
3.6 years ago swbarnes2 ★ 1.4k
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0
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1.1k
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Answer: Answer: Getting erros from dds
3.6 years ago swbarnes2 ★ 1.4k
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Answer: Answer: DESeq2 comparisons with multiple experimental variables?
3.6 years ago swbarnes2 ★ 1.4k
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2.8k
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Answer: Answer: Time series and interaction in DESeq2
3.6 years ago swbarnes2 ★ 1.4k
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1.2k
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Answer: Answer: Setting up read count data for DESeq2 to create a dds object
3.6 years ago swbarnes2 ★ 1.4k
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0
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1.2k
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Comment: Comment: Setting up read count data for DESeq2 to create a dds object
3.6 years ago swbarnes2 ★ 1.4k
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1.7k
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Comment: Comment: ScRNA sequencing data _Seurat_Object_DESEQ2_Analayis_DGE
3.7 years ago swbarnes2 ★ 1.4k
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1
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13k
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Comment: Comment: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
3.7 years ago swbarnes2 ★ 1.4k
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1.9k
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Comment: Comment: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
3.7 years ago swbarnes2 ★ 1.4k
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2.3k
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Answer: Answer: Understandig listValues argument of DESEQ in multiple group comparisons
3.7 years ago swbarnes2 ★ 1.4k
0
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0
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1.8k
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Comment: Comment: Multi-factor paired RNAseq differential analysis with DEseq2
3.8 years ago swbarnes2 ★ 1.4k
0
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2
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1.8k
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Answer: Answer: Multi-factor paired RNAseq differential analysis with DEseq2
3.8 years ago swbarnes2 ★ 1.4k
0
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0
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1.8k
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Comment: Comment: DE analysis model matrix for paired samples
3.8 years ago swbarnes2 ★ 1.4k
0
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0
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2.3k
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Comment: Comment: PlotPCA in DESeq2 doesn't produce exactly the same result as prcomp
3.8 years ago swbarnes2 ★ 1.4k
0
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6.0k
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Comment: Comment: How to remove batch effect from RNA-seq without count data?
3.8 years ago swbarnes2 ★ 1.4k
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1
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2.9k
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Comment: Comment: DESeq2 analysis for targeted RNA-seq
3.9 years ago swbarnes2 ★ 1.4k
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10k
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Comment: Comment: Adding sample label to PCA plot
3.9 years ago swbarnes2 ★ 1.4k
2
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5.2k
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Answer: Answer: Start to End RNA-Seq with R Bioconductor
3.9 years ago swbarnes2 ★ 1.4k
0
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0
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1.7k
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Comment: Comment: sigh of log2FC values in DESeq2
3.9 years ago swbarnes2 ★ 1.4k
0
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1
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6.2k
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Answer: Answer: Deseq2 normalization for WGCNA
3.9 years ago swbarnes2 ★ 1.4k
1
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1
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2.6k
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Answer: Answer: DESeq2 - batch, condition and tissue information
3.9 years ago swbarnes2 ★ 1.4k
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1
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2.2k
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Answer: Answer: NA values for mitochondrial gene percentage
3.9 years ago swbarnes2 ★ 1.4k
1
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1
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2.0k
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Answer: Answer: Design formula in DESeq2
3.9 years ago swbarnes2 ★ 1.4k
475 results • Page 4 of 10
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