User: berry14

gravatar for berry14
berry140
Reputation:
0
Status:
New User
Location:
Last seen:
1 month, 1 week ago
Joined:
1 month, 3 weeks ago
Email:
y************@gmail.com

Posts by berry14

<prev • 3 results • page 1 of 1 • next >
0
votes
1
answers
88
views
1
answers
Comment: C: Missing design when using Scran to create a DESeqDataSet
... Yes, you are right. That works. Thanks! And I agree the bare minimum is a cleaner solution. ...
written 7 weeks ago by berry140
0
votes
1
answers
88
views
1
answers
Comment: C: Missing design when using Scran to create a DESeqDataSet
... In DESeq2, the design is added when setting up the object using various methods, such as DESeqDataSetFromTximport, DESeqDataSetFromHTSeqCount, DESeqDataSetFromMatrix, or DESeqDataSet When Scran convert SCESet to DESeqDataSet, the count matrix is converted directly to DESeqDataSet. I was not able ...
written 7 weeks ago by berry140
1
vote
1
answer
88
views
1
answer
Missing design when using Scran to create a DESeqDataSet
... The Scran vignette indicates the SCESet object can be convert to an object for DESeq2 analysis. http://bioconductor.org/packages/devel/bioc/vignettes/scran/inst/doc/scran.html Once it converted, it's already an DESeqDataSet, yet without a design.  it's not obvious to me how to add a design to this ...
deseq2 scran written 7 weeks ago by berry140 • updated 7 weeks ago by Aaron Lun17k

Latest awards to berry14

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 159 users visited in the last hour