User: TEXTORIS Julien

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Posts by TEXTORIS Julien

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Answer: A: GEOquery getGEO error in read.table
... Hi Dave, I could not reproduce your error with R2.15.2 and GEOQuery 2.23.1 I updated to GEOQuery 2.24 as you and i also worked without error ? Are you sure you have Curl and XML libs (outside R) installed properly ? Julien On 08/01/2013 06:40, Dave Tang wrote: > Dear mailing list, > > ...
written 6.2 years ago by TEXTORIS Julien160
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Comment: C: Double KO and timecourse design / limma
... Le 08/01/2013 01:43, Gordon K Smyth a ?crit : > >> Date: Mon, 07 Jan 2013 08:29:17 +0100 >> From: Textoris Julien >> To: bioconductor at r-project.org >> Subject: [BioC] Double KO and timecourse design / limma >> >> Dear all, >> >> First thing, ha ...
written 6.2 years ago by TEXTORIS Julien160
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Double KO and timecourse design / limma
... Dear all, First thing, happy new year to all and thanks for all the knowledge/advices brought through the list ! I would like to have your advice/comments on the following design. I have to analyse a microarray dataset performed on MoGene ST 1.0 which comprise 22 arrays. I have allmost no replica ...
microarray timecourse written 6.2 years ago by TEXTORIS Julien160 • updated 6.2 years ago by Gordon Smyth36k
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Comment: C: Merging various panel for flow cytometry
... Thanks Andrew for pointing this out ! I understand the limitation clearly now. Regards, Julien 2012/12/1 A H > Hi Julien, > > Unlike some transcriptional datasets, the parameters measured for each > event (cell) in FCS are not necessarily correlated. > > Because of this, it is ...
written 6.3 years ago by TEXTORIS Julien160
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Merging various panel for flow cytometry
... Hi all, I'm quite new to flow cytometry, since i have mostly perfomed transcritionnal analyses before. I discovered the flowCore, flowViz, flowXXX packages in bioconductor and found it amazing. I have a series of data with two different panels (tubes) for each patient. As there are some common mar ...
glad flowcore flowviz written 6.3 years ago by TEXTORIS Julien160 • updated 6.3 years ago by Jiang, Mike1.2k
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Comment: C: ABPkgBuilder (AnnBuilder) subscript out of bounds error
... I still have the same error with the latest version. Julien Le Lundi 6 F?vrier 2006 19:21, Ting-Yuan Liu a ?crit?: > Hi Henrik, > > Which version of AnnBuilder you are using? I believe the "subscript out > of bounds error" had been fixed. If you tried the developmental version > A ...
written 13.1 years ago by TEXTORIS Julien160
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Comment: C: Error while using AnnBuilder
... Hi, thanks for the answers. But the error is still there ! I've updated the packages for : - AnnBuilder - Biobase - GOstats - goCluster -go Here is the log this time : > library(AnnBuilder) Le chargement a n?cessit? le package : Biobase Le chargement a n?cessit? le package : tools Welcome to ...
written 13.2 years ago by TEXTORIS Julien160
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Error while using AnnBuilder
... Hi, We are currently trying to develop a library to deal with nylon arrays. I wanted to build an annotation package for our chip, but i have an error with GO. Here is the log : $> mySrcUrls <- c(EG="ftp://ftp.ncbi.nih.gov/gene/DATA",UG="ftp://ftp.ncbi.nih.gov/rep ository/UniGene/Homo_sapien ...
annotation go organism annotate annbuilder written 13.2 years ago by TEXTORIS Julien160 • updated 13.2 years ago by Seth Falcon7.4k
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Which method best fit nylon single channel technology ?
... Hi all, I'm using a nylon technology, with a radioactive labelling of the sample, and with cDNA probes spotted on the membrane. We do first an hybridisation with a vector oligonucleotide, that match all spot on the chip. This is to adjust for the different quantities spotted on the chip. Then we h ...
affy limma oligo written 13.4 years ago by TEXTORIS Julien160 • updated 13.4 years ago by TEXTORIS Julien10
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Comment: C: limma - read function
... Sylvain FORET wrote: > TEXTORIS Julien wrote: > >> Hi, >> >> Could someone send me an imagene file as an example ? >> I tried to write a read function for my quantifier software (BZSCAN), >> and i try to follow the read.imagene function as i also have two >> ...
written 13.5 years ago by TEXTORIS Julien160

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