User: mark.ebbert

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Posts by mark.ebbert

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Comment: C: Normalize to additional variable (brain weight) in DESeq2
... Thanks Mike. Why not do the same for GC content and transcript length? Scratch that. GC content and transcript lengths are per gene, where brain weight is a single value across all genes.  ...
written 4 weeks ago by mark.ebbert0
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Normalize to additional variable (brain weight) in DESeq2
... Hi, I'm working on a whole-tissue (brain) RNASeq study in mice where there is substantial neuronal death over time. We have multiple ages. I'd like to normalize to brain weight and would appreciate feedback to make sure I'm not doing anything that would violate DESeq2's internal modeling. I perfor ...
normalization cqn deseq2 normalized counts written 4 weeks ago by mark.ebbert0 • updated 4 weeks ago by Michael Love15k

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