User: mirca.saurty

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Posts by mirca.saurty

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Comment: C: Constructing a Summarised Experiment object
... I've been able to fix the colData issue. Now the problem is the NormCounts slot of the Assays.  The class of the assay argument is a matrix.  Below is the script I'm using and the error message I'm getting. CSCall is my dataset (table with gene names as rownames and sample names as column names) and ...
written 20 months ago by mirca.saurty0
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Comment: C: Constructing a Summarised Experiment object
... I've finally been able to create a SummarizedExperiment object but the assay slot is not empty. Thus, I cannot use the object to create a SingleCellExperiment object as input for the scDD package. I've tried creating the SingleCellExperiment object directly from my dataframe. Again, I'm having issue ...
written 20 months ago by mirca.saurty0
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Comment: C: Constructing a Summarised Experiment object
... I've looked into this section but I can't create the object with my data. ...
written 20 months ago by mirca.saurty0
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Constructing a Summarised Experiment object
... I'm having difficulties in creating a Summarised Experiment object with my data. I need this object to proceed with the scDD package. The instructions in the Vignettes of the scDD package are not very clear to me.  Can anyone help? ...
scdd written 20 months ago by mirca.saurty0 • updated 20 months ago by eshelden20

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