User: fshodan

gravatar for fshodan
fshodan0
Reputation:
0
Status:
New User
Last seen:
6 months, 2 weeks ago
Joined:
1 year, 10 months ago
Email:
f******@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by fshodan

<prev • 10 results • page 1 of 1 • next >
0
votes
1
answer
126
views
1
answer
Overall genes number in the TissueEnrich package output
... Hi, I've been reproducing steps in the manual here - [https://bioconductor.org/packages/release/bioc/vignettes/TissueEnrich/inst/doc/TissueEnrich.html][1]. I supplied 147 differentially expressed genes to the `GeneSet` function. Out of 147 - 82 genes are unmapped, and the number of unique genes ac ...
tissueenrich written 7 months ago by fshodan0 • updated 7 months ago by Ashish Jain0
0
votes
0
answers
239
views
0
answers
Comment: C: ggbio won't plot ideogram in R version 3.3.1, ggplot2 version 3.1.0
... I had the same error, but in R version 3.4.4. ...
written 8 months ago by fshodan0
0
votes
1
answer
367
views
1
answers
Comment: C: topGO "invalid argument to unary operator"
... I just thought it should be less rare, because there are many ontologies, and if user imports smth less mainstream than GO, I can imagine this situation can happen with more than 4 genes. Thanks for the help again! ...
written 9 months ago by fshodan0
0
votes
1
answer
367
views
1
answers
Comment: C: topGO "invalid argument to unary operator"
... You mean it's super rare that people get zero hits and therefore the error never popped up before? ...
written 9 months ago by fshodan0
0
votes
1
answer
367
views
1
answers
Comment: C: topGO "invalid argument to unary operator"
... Haha, super lame mistake, and I thought I double checked the code before writing here... Thanks a lot. However, I think the second one still remains, I mean when I reduce number of genes even more: > dput(genesList) structure(c(0.000323467569697372, 1.47828072650949e-05, 9.09536111428312e-06, ...
written 9 months ago by fshodan0
0
votes
1
answer
367
views
1
answers
Comment: C: topGO "invalid argument to unary operator"
... > genesList <- degs$P.Value[1:5] > names(genesList) <- degs$ENTREZID[1:5] > genesList 677818 107985744 102725022 105370787 260294 3.234676e-04 1.478281e-05 9.095361e-06 2.126379e-03 5.187784e-03 > sampleGOdata <- - new("topGOdata", + ...
written 9 months ago by fshodan0
3
votes
1
answer
367
views
1
answer
topGO "invalid argument to unary operator"
... > genesList <- degs$P.Value > names(genesList) <- degs$ENTREZID > sampleGOdata <- - new("topGOdata", + description = "Simple session", ontology = "BP", + allGenes = genesList, geneSel = function(x){x<0.01}, + nod ...
topgo software error written 9 months ago by fshodan0 • updated 9 months ago by James W. MacDonald50k
0
votes
2
answers
3.2k
views
2
answers
Comment: C: How to use brainarray custom cdf with oligo package?
... Dear James, thanks a lot for this answer! ...
written 9 months ago by fshodan0
0
votes
0
answers
270
views
0
answers
[netbenchmark] GeneNet method "Error in .local(object, from, to, ...)"
... GeneNet method usage from netbenchmark package sometimes results in error: > library(netbenchmark) > top20 <- netbenchmark(datasources.names = "syntren300", datasets.num=1, experiments = 280) datasource: syntren300 dataset: 1 aracne.wrap c3net.wrap clr.wrap GeneNet.wrap Estimate (local) f ...
netbenchmark written 19 months ago by fshodan0
0
votes
0
answers
260
views
0
answers
[netbenchmark] Get a list of Regulators
... Hi, for the netbenchmark package (https://github.com/Bioconductor-mirror/netbenchmark) is it possible to get a list of regulators for each generated network? Best, Alina. ...
netbenchmark written 19 months ago by fshodan0

Latest awards to fshodan

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 160 users visited in the last hour