User: fshodan

gravatar for fshodan
fshodan0
Reputation:
0
Status:
New User
Last seen:
8 months, 2 weeks ago
Joined:
1 year, 11 months ago
Email:
f******@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by fshodan

<prev • 10 results • page 1 of 1 • next >
0
votes
1
answer
144
views
1
answer
Overall genes number in the TissueEnrich package output
... Hi, I've been reproducing steps in the manual here - [https://bioconductor.org/packages/release/bioc/vignettes/TissueEnrich/inst/doc/TissueEnrich.html][1]. I supplied 147 differentially expressed genes to the `GeneSet` function. Out of 147 - 82 genes are unmapped, and the number of unique genes ac ...
tissueenrich written 8 months ago by fshodan0 • updated 8 months ago by Ashish Jain0
0
votes
0
answers
275
views
0
answers
Comment: C: ggbio won't plot ideogram in R version 3.3.1, ggplot2 version 3.1.0
... I had the same error, but in R version 3.4.4. ...
written 10 months ago by fshodan0
0
votes
1
answer
411
views
1
answers
Comment: C: topGO "invalid argument to unary operator"
... I just thought it should be less rare, because there are many ontologies, and if user imports smth less mainstream than GO, I can imagine this situation can happen with more than 4 genes. Thanks for the help again! ...
written 11 months ago by fshodan0
0
votes
1
answer
411
views
1
answers
Comment: C: topGO "invalid argument to unary operator"
... You mean it's super rare that people get zero hits and therefore the error never popped up before? ...
written 11 months ago by fshodan0
0
votes
1
answer
411
views
1
answers
Comment: C: topGO "invalid argument to unary operator"
... Haha, super lame mistake, and I thought I double checked the code before writing here... Thanks a lot. However, I think the second one still remains, I mean when I reduce number of genes even more: > dput(genesList) structure(c(0.000323467569697372, 1.47828072650949e-05, 9.09536111428312e-06, ...
written 11 months ago by fshodan0
0
votes
1
answer
411
views
1
answers
Comment: C: topGO "invalid argument to unary operator"
... > genesList <- degs$P.Value[1:5] > names(genesList) <- degs$ENTREZID[1:5] > genesList 677818 107985744 102725022 105370787 260294 3.234676e-04 1.478281e-05 9.095361e-06 2.126379e-03 5.187784e-03 > sampleGOdata <- - new("topGOdata", + ...
written 11 months ago by fshodan0
3
votes
1
answer
411
views
1
answer
topGO "invalid argument to unary operator"
... > genesList <- degs$P.Value > names(genesList) <- degs$ENTREZID > sampleGOdata <- - new("topGOdata", + description = "Simple session", ontology = "BP", + allGenes = genesList, geneSel = function(x){x<0.01}, + nod ...
topgo software error written 11 months ago by fshodan0 • updated 11 months ago by James W. MacDonald51k
0
votes
2
answers
3.3k
views
2
answers
Comment: C: How to use brainarray custom cdf with oligo package?
... Dear James, thanks a lot for this answer! ...
written 11 months ago by fshodan0
0
votes
0
answers
282
views
0
answers
[netbenchmark] GeneNet method "Error in .local(object, from, to, ...)"
... GeneNet method usage from netbenchmark package sometimes results in error: > library(netbenchmark) > top20 <- netbenchmark(datasources.names = "syntren300", datasets.num=1, experiments = 280) datasource: syntren300 dataset: 1 aracne.wrap c3net.wrap clr.wrap GeneNet.wrap Estimate (local) f ...
netbenchmark written 21 months ago by fshodan0
0
votes
0
answers
271
views
0
answers
[netbenchmark] Get a list of Regulators
... Hi, for the netbenchmark package (https://github.com/Bioconductor-mirror/netbenchmark) is it possible to get a list of regulators for each generated network? Best, Alina. ...
netbenchmark written 21 months ago by fshodan0

Latest awards to fshodan

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 320 users visited in the last hour