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User: elim

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elim0
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Posts by elim

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Comment: C: How barcode-plot enrichment is calculated?
... Thank you for your explanation Gordon, makes sense to me now. ...
written 4 months ago by elim0
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How barcode-plot enrichment is calculated?
... Hello, I have been trying to find how the enrichment for the barcode plot is calculated. It seem to be different from the "traditional" GSEA with random-walk since the scores already starts high. The value of enrichment seems to change according to the worm.span. For example, with default value I ...
limma camera barcodeplot written 4 months ago by elim0 • updated 4 months ago by Gordon Smyth36k
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SVA/Combat without fitting an intercept
... Hello, I'm trying to remove batch effects from a dataset with sva, but I'm having trouble fitting the contrasts I need because of the intercept. I could only find examples with an intercept, but the majority of my analysis are very hard to interpret with an intercept. Is it ok to use sva with a mod ...
limma sva combat batch effect written 15 months ago by elim0

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