User: tony j

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Posts by tony j

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Comment: C: predictCoding errors with: sequence ^1$ not found
... Yep - figured it out almost immediately after posting. The Hsapiens seqlevels were not sent to "NCBI": seqlevelsStyle(Hsapiens) <- "NCBI" ...
written 25 days ago by tony j0
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predictCoding errors with: sequence ^1$ not found
... I am attempting to run predictCoding as follows for a small set of variants across the complete genome, resulting in the sequence not found error: > predictCoding(vcf, txdb_hg19, Hsapiens) Error in .getOneSeqFromBSgenomeMultipleSequences(x, names[i], start[i], : sequence ^1$ not found Both ...

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