User: russell.stewart.j

Reputation:
0
Status:
New User
Location:
Last seen:
1 month ago
Joined:
8 months, 3 weeks ago
Email:
r****************@gmail.com

Posts by russell.stewart.j

<prev • 3 results • page 1 of 1 • next >
0
votes
1
answers
57
views
1
answers
Comment: C: DESeq2 Subsetting gives error in contrasts - can be applied only to factors with
... Thanks Michael, I rebuilt my dds and ran again without that factor like so and it worked: dds_Particle <- DESeqDataSetFromMatrix(countData = cts_df_ordered, colData = coldata_ordered_trim, design = ~ BMI + Diagnosis) dds_MP <- dds_Particle[, dds_Particle$Particle %in% c("MP")] dds_MP$Pa ...
written 4 weeks ago by russell.stewart.j0
1
vote
1
answer
57
views
1
answer
DESeq2 Subsetting gives error in contrasts - can be applied only to factors with 2 or more levels
... I'm running DESeq2 on a small RNA seq experiment. The coldata has 87 samples total and begins like this: Sample BMI Diagnosis Particle 1 Obese PCOS MP 10 Obese PCOS ...
0
votes
1
answers
1.5k
views
1
answers
Comment: C: DESeq2 - couldn't find the function called DESeqDataSetFromMatrix
... I had this issue as well in RStudio when trying to knit RMarkdown code. I realized that the library can't be loaded independently of trying to knit the package. ...
written 8 months ago by russell.stewart.j0

Latest awards to russell.stewart.j

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 172 users visited in the last hour