User: martis.mihaela

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Posts by martis.mihaela

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Comment: C: GO-terms delivered by GOstats hyperGTest() do not exist in my universe
... Thanks On 10 Nov 2017 6:28 pm, "Jenny Drnevich [bioc]" <noreply@bioconductor.org> wrote: > Activity on a post you are following on support.bioconductor.org > > User Jenny Drnevich <https: support.bioconductor.org="" u="" 2812=""/> wrote Comment: > GO-terms delivered by GOst ...
written 9 days ago by martis.mihaela0
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Comment: C: GO-terms delivered by GOstats hyperGTest() do not exist in my universe
... Thank you very much for the answer. That explains everything. Is there a way to pool only those annotated in my own universe? /Mihaela On 10 Nov 2017 6:16 pm, "Jenny Drnevich [bioc]" <noreply@bioconductor.org> wrote: > Activity on a post you are following on support.bioconductor.org > ...
written 9 days ago by martis.mihaela0
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Comment: C: GO-terms delivered by GOstats hyperGTest() do not exist in my universe
... Sorry for the late response. Here is an example for one of the enriched GO-terms which are not in my universe list: The Go-term GO:0050136 has a count of 3 genes, namely 808221, 808224, and 808225 (entrezIds). In my universe the GO-terms corresponding to this genes are: GO:0016021, GO:0005747, GO:0 ...
written 10 days ago by martis.mihaela0
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GO-terms delivered by GOstats hyperGTest() do not exist in my universe
... Hello, I'm using GOstats (version 2.42.0) to perform GO enrichment analysis in a non-model organism. The input data was obtained from the DE analysis of RNA-Seq data. For the analysis I used an own gene universe, as well as a sub-list of this genes to run the hypergeometric test. The function hy ...
gostats written 11 days ago by martis.mihaela0

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