User: scamiolo

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scamiolo10
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Posts by scamiolo

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Comment: C: Normalizing an entire dataset
... Thanks Sean!! ...
written 7 weeks ago by scamiolo10
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Normalizing an entire dataset
... Dear all, I am using deseq2 in order to calculate differential expression between different experimental conditions with two replicates for each. I understand deseq2 perform a normalization on the reads count in order to make the experiments comparable when different overall coverage is obtained. F ...
deseq2 written 7 weeks ago by scamiolo10 • updated 7 weeks ago by Sean Davis21k
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zero counts and deseq2
... Dear Community,   I am writing to kindly ask support on the software deseq2. I am currently working on differential expression in transcripts of vitis vinifera. I aligned several RNAseq experiments on the transcripts sequences of the vitis reference genome using bwa and computed  fpkm and effectiv ...
deseq2 written 9 weeks ago by scamiolo10 • updated 9 weeks ago by Michael Love15k

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