User: fansili2013

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fansili201310
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Posts by fansili2013

<prev • 8 results • page 1 of 1 • next >
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Comment: C: paired two groups comparison using limma
... Thanks a lot, Aaron. I think I need to go to a library and study my linear regression textbook again. ...
written 10 months ago by fansili201310
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Comment: C: How can I check the quality of code I have written? How to QC?
... why is it tagged with limma? ...
written 10 months ago by fansili201310
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Comment: C: paired two groups comparison using limma
... Thank you Aaron. If I understand this correctly, the model X is not the mixed effect model?  ...
written 10 months ago by fansili201310
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Comment: C: How to get the ordinary t statistic for two paired groups?
... Thank you! I got it. ...
written 10 months ago by fansili201310
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Comment: C: How to get the ordinary t statistic for two paired groups?
... Hi Ryan, Thanks for your help! Maybe my question was not very clear. I am looking for correct way of retrieving the ordinary t of paired t test from limma. So I think it shouldn't related to the variance equality, which only independent t test cares. (It is good to know that the limma assumes equal ...
written 10 months ago by fansili201310
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paired two groups comparison using limma
... Hi, I am comparing two paired groups. Should I follow 9.4.1 paired samples in the user guide or 9.7 in the user guide? [I know 9.7 is for mixed of independent and dependent factors. But two paired group is a special case of 0 independent and 1 dependent factor, so 9.7 should be right also for two p ...
limma paired test written 10 months ago by fansili201310 • updated 10 months ago by Aaron Lun23k
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Comment: C: matrix of residuals from limma, with and without the phenotype of interest
... Hi Gordon, what if a covariate (which I think including confounders) is repeated measure? ...
written 10 months ago by fansili201310
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Pathview: cannot save pathway "01100"
... I am trying to use the R packages, pathview.   Code: set.seed(10) sim.cpd.data=sim.mol.data(mol.type="cpd", nmol=3000) sim.cpd.data2 = matrix(sample(sim.cpd.data, 18000, replace = T), ncol = 6) rownames(sim.cpd.data2) = names(sim.cpd.data) colnames(sim.cpd.data2) = paste("exp", 1:6, sep = "") ...
pathview written 17 months ago by fansili201310

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