User: Denniswu

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Denniswu0
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Posts by Denniswu

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Comment: C: EdgeR design matrix with 3 factors
... So even though design1 and design2 are not the same model matrix, the results I get from EdgeR will be the same? What do the columns in the model matrix actually mean in that case? In section 3.3.4 in the EdgeR User's Guide, the model matrix model.matrix(~Treat * Time, data=targets) is composed of: ...
written 11 months ago by Denniswu0
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Comment: C: EdgeR design matrix with 3 factors
... Thank you for your help! Would this design matrix, listing out each category as independent samples, provide the most information to EdgeR? I had previously thought that part of the reason to make design matrices was to allow EdgeR to control for effects of each of the factors alone. Actually looki ...
written 11 months ago by Denniswu0
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EdgeR design matrix with 3 factors
... Hello, I'm attempting to run a glm analysis with edgeR on 32 biologically independent samples, with 3 factors. I have sex, age, and genotype. I'd like to create a full design matrix, but I'm having some trouble doing this, and understanding all the contrasts possible. > sex = rep(c("m","f"),eac ...
rnaseq edger glm written 11 months ago by Denniswu0

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