User: analeigh.gui

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Posts by analeigh.gui

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ChIPQC error: "names' attribute [9] must be the same length as the vector [7]"
... I saw a similar post using ChIPQC package for ATAC-Seq peaks quality check but not answer https://support.bioconductor.org/p/117577/#117670 As I have a different setting than the above post, so I want to detail my problems and ask for help. I want to use ChIPQC package to check the quality of H3K ...
chipqc written 4 weeks ago by analeigh.gui0
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Comment: C: ATAC-Seq peaks quality control with ChIPQC package, but getting error
... Got the same error. Is there any update? ...
written 4 weeks ago by analeigh.gui0
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Comment: C: How to compare the design formulas of DESeq2?
... Thanks a lot! I have a follow-up question regarding to the replicate number for interaction. We are also thinking about to increase the replicate number to 12 (6 female + 6 male) for each strain, to account for the individual difference. In that sense, is it the number of replicates enough to take ...
written 19 months ago by analeigh.gui0
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How to compare the design formulas of DESeq2?
... Dear all, I have the samples from two mouse strains in both genders. Strain Gender AJ M AJ F BL6 M BL6 F The design formulas I have are: formula 1: ~ strain # test the effect of different strains formula 2: ~ strain + gender # ...
deseq2 written 19 months ago by analeigh.gui0

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