User: ans74

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ans740
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Posts by ans74

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Answer: A: running msa (msa) aborts R session
... @UBodenhofer, thanks for the reply! The sequences are confidential indeed, sorry. Tried sub-sampling my dataset to 500 and it ran perfectly in ~15min. However, after subsampling it to 5000, it's still running after 2h and took up to ~15GB RAM. i have much more than that available but this might be ...
written 4 days ago by ans740
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running msa (msa) aborts R session
... Hello there, I'm trying to run msa (msa package, version 1.10.0) in R version 3.4.3 (2017-11-30) -- "Kite-Eating Tree" with ~71,000 260-400bp sequences. However, R session aborts everytime I run the following: alignment <- msa(dna, method="ClustalW") No extra info is given, since a new R sess ...
alignment software error R msa written 6 days ago by ans740 • updated 4 days ago by UBodenhofer230

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