User: zhalehsafikhani

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Posts by zhalehsafikhani

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Comment: C: scran::trendVar throwing error
... Oh great it works now! It should have been obvious to me too! However, it was my first attempt to use scran. Many thanks for your help Aaron! ...
written 5 days ago by zhalehsafikhani0
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Comment: C: scran::trendVar throwing error
... I shared the data with you on Google drive Aaron. I would appreciate if you take a look to see if you find anything odd with the data which makes it doesnt fit trendVar function criteria. ...
written 5 days ago by zhalehsafikhani0
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Answer: A: scran::trendVar throwing error
... Hi Aaron, Yes I use the latest versions: [1] scran_1.6.5                scater_1.6.1               SingleCellExperiment_1.0.0 And yes I was doing sce <- scater::normalize(sce) right before calling quantile on logcounts(sce), apparently was dropped in my copy and paste. I don't think the the t ...
written 5 days ago by zhalehsafikhani0
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scran::trendVar throwing error
... Hello, I want to use the trendVar function in screen packs to get the highly variant genes across my single cell samples. But for some reason it is not working for me and throwing the following error: Error in .trend_var(assay(x, i = assay.type), ..., subset.row = subset.row) :  need at least 4 va ...
scran written 5 days ago by zhalehsafikhani0

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