User: Clara

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Clara0
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Posts by Clara

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Comment: C: tximport of kallisto files
... Great!! Thank you! Clara   ...
written 5 days ago by Clara0
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Comment: C: tximport of kallisto files
... Hi, Thank you for the quick reply! When I supply the tx2gene for the transcripts that can be grouped to a gene,  tximport() does tell me which ones are left out. However, if I want to run the same analysis without grouping at the gene level, but only using the transcripts that could be grouped by g ...
written 5 days ago by Clara0
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tximport of kallisto files
... Hello, I am trying to import transcript abundances (from kallisto .tsv files) to analyze with DESeq2. My goal is to do a gene-level and a transcript-level analysis of differential expression. In my kallisto files however, I have several transcripts from unidentified genes which does not allow me t ...
deseq2 tximport kallisto written 6 days ago by Clara0 • updated 6 days ago by Michael Love15k

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