User: dhwani2410

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dhwani24100
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Posts by dhwani2410

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Comment: C: In SVA, the percent of biological variable of interest didnot change after addin
... Can you please answer the query. Didnt get answer in either of the platform ...
written 11 days ago by dhwani24100
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In SVA, the percent of biological variable of interest didnot change after adding SV1
... SVM plots https://ibb.co/jyQdgjR "Pre SVM" https://ibb.co/BnNnNL1 "Post SVM" I used SVM to find hidden confounding variable.The percentage of residuals were reduced after addition of new SV1 (can be seen in Post SVM image). However the percent of contribution of biological variable of interest("P ...
microarray sva R combat covariates written 20 days ago by dhwani24100 • updated 20 days ago by Martin Morgan ♦♦ 24k
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Comment: C: Query with Biostrings pairwise alignment output positon
... I am able to resolve the confusion for the second query with the help of your explanations. However i tried addressing the first problem based on the formula for gap opening and extension. The answer still remains same even after adding the changes. I have used Gap opening penalty as 10.5 (10 openin ...
written 23 months ago by dhwani24100
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Query with Biostrings pairwise alignment output positon
... > query <- readDNAStringSet("ref.fasta") > sub1 <- readDNAStringSet("seq1.fasta") > sub2 <- readDNAStringSet("seq2.fasta") > mat <- nucleotideSubstitutionMatrix(match = 5, mismatch = -4, baseOnly = TRUE) > res1 <- pairwiseAlignment(pattern = query,subject = sub1,gapOpe ...
alignment biostrings pairwisealignment written 23 months ago by dhwani24100 • updated 23 months ago by Hervé Pagès ♦♦ 14k

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