User: tiroshamit

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tiroshamit0
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Posts by tiroshamit

<prev • 5 results • page 1 of 1 • next >
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Comment: C: How to deal with Affymetrix GeneChip probeids that map to multiple genes
... Although old, very helpful response. Many thanks James. ...
written 5 months ago by tiroshamit0
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Comment: C: Pathview error: ran fine yesterday
... You have to make sure that dplyr is not masking the "source_" command. Simply try this before your command to confirm: detach("package:pathview", unload=TRUE) detach("package:dplyr", unload=TRUE) library(pathview)   ...
written 18 months ago by tiroshamit0
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Answer: A: Errors with champ.block
... Hello Yuan I tried running the EPIC test data and had the same problem.     Edit: I ran the 450K data and it worked smoothly. In the global environment variables I see "probe.features", but not "probe.features.epic". Here is the script I am using: library(ChAMP) data(EPICSimData) champ.QC() ...
written 22 months ago by tiroshamit0
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Comment: C: Errors with champ.block
... Hello Yuan, Thank you very much for this great tool and for your prompt response. I have solved this issue, it seems that I had to use the ChAMP.DMR before the ChAMP.BLOCK. Anyway, it runs ok now. However, in the meanwhile I had another issue, that I saw it was mentioned previously. I am trying t ...
written 22 months ago by tiroshamit0
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Errors with champ.block
... Hi ChAMP users, I am running the Champ according to the steps in the documentation. However, when trying to analyze the champ.block, I get errors, and from some reason - a different error in each run. My data includes 37 samples analyzed by EPIC array. All the analyses up to this level (QC, norm, ...
champ champ.block written 22 months ago by tiroshamit0

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