User: shenwei1376

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Posts by shenwei1376

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Answer: A: how to set boolean filter
... problem solved!!! use "uniprotswissprot" instead of "with_uniprotswissprot" will skip this issue. However, biomart works every inefficiently in term of converting the IDs. This is the 2nd time I found this issue. Only less than half my protein list was get converted. Instead, "AnnotationDbi" packag ...
written 20 months ago by shenwei13760
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how to set boolean filter
... Hi every,  I was trying to extract the gene informations from a list of swissprot ID (proteins: Q3T052, F1N3Q7....). Here is the code I used: library("biomaRt") proteinID<-dataset$`Accession Number` #extract the protein ID from the dataset ensembl=useMart("ensembl", dataset="btaurus_gene_ensemb ...
biomart ensembl boolean filter written 20 months ago by shenwei13760
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Answer: A: biomaRt is not working
... The method Mike offered worked perfectly for me! Thank you Mike! ...
written 22 months ago by shenwei13760
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Comment: A: ENSEMBL causing issues replicating previous results
... I am just having the same issue: can't do run my old code. no dataset can be found or loaded. Hope anyone can help ...
written 22 months ago by shenwei13760
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biomaRt is not working
... Hi everyone, The biomart package stopped working for today. I used the exact same code I run several weeks ago, but now it can not be executed. The attached is my code and error message: > library("biomaRt") > ensembl=useMart("ensembl", dataset="hsapiens_gene_ensembl") Error in checkDataset( ...
biomart written 22 months ago by shenwei13760

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Popular Question 16 months ago, created a question with more than 1,000 views. For biomaRt is not working

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