User: rahil

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rahil30
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Posts by rahil

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Answer: A: How to use custom cdf "hgu133plus2hsentrezgcdf"?
... what's the problem here? When I try to get the symbols for my probe set list after deferentially gene expression analysis by limma. probeset.list <- topTable(dge, coef=1, number=100, lfc=2) gene.symbols <- getSYMBOL(rownames(probeset.list), "hgu133plus2hsentrezg") I got this error: Error: ...
written 22 months ago by rahil30
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Comment: C: How to use custom cdf "hgu133plus2hsentrezgcdf"?
... Many thanks Guido, it is really helpful. ...
written 22 months ago by rahil30
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How to use custom cdf "hgu133plus2hsentrezgcdf"?
... Hello, I am analyzing the GSE27157 dataset using the raw CEL files. I want to use custom cdf "HGU133PLUS2_HS_ENTREZG". I downloaded the cdf file "GPL23270_HGU133Plus2_Hs_ENTREZG.cdf.gz"  from here  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL23270. This is the script that I tried: celfi ...
customcdf hgu133plus2 affy affymetrix microarrays written 22 months ago by rahil30

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