User: yk.gatc

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yk.gatc0
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Posts by yk.gatc

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Comment: A: DESeq2 LFC shrinkage is for designs with interactions
... Thanks Michael for the quick response.  I did try "ashr" method, but it gave me the following warning -  > resultsNames(dds) [1] "Intercept" "grp_Y_vs_X" "grpX.ind.n10" "grpY.ind.n10" "grpX.ind.n2" [6] "grpY.ind.n2" "grpX.ind.n3" "grpY.ind.n3" "grpX.ind.n4" "grpY.ind.n4" [11] "grpX. ...
written 4 days ago by yk.gatc0
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DESeq2 LFC shrinkage is for designs with interactions
... Hi, It seems like LFC shrinkage is not implemented for designs with interactions. Is there a way to get shrinked LFC values for designs with interactions? DESeq2_1.19.14 Thanks, YK ...
deseq2 lfcshrink written 5 days ago by yk.gatc0

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