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Posts by greg.deakin
... Ah, o.k. thanks Mike. I guess it's pretty much an edge case, especially in RNA-seq, and not too difficult for me to correct for. I'll have a look at using LRT. As you guess my data (mostly soil microbiom) might violate a few of the expectations of the DESeq model - it's a bit of an open question h ...
... Hello - I have an issue with genes (or OTUs in my case) which have zero expression across a condition. Seems to be the same issue as https://support.bioconductor.org/p/56190/#56191 Works as expected (well as I'd expect) in DESeq2 1.10.1 Below are a few of the details model = ~ Block + Treatment ...
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